Phylogeographic
GeoPhyloBuilder v.1.0.1
Geophylobuilder is an extension for ArcGIS that builds a spatiotemporal phylogeographic GIS model from a tree and a set of geographical features. This version has a bug that results in branches crossing the -180/ 180 meridian (line of longitude).
GEODIS v.2.6
A tool to perform the nested clade phylogeographic analysis (NCPA). GEODIS is a software for the calculation of the statistics and associated P-values for the nested clade analysis (NCA) developed by Templeton and collaborators. In the NCA,
COAL v.1.0
COAL is a software for computing gene tree probabilities and simulating gene trees in species trees under the coalescent model. A tool for computing gene tree probabilities.